Search Zenodo in Duaer

Handle errors gracefully in Duaer

How to handle execution errors in Duaer.

Fix memory issues in Duaer

Duaer does not restrict how much data each node can fetch. When an execution needs more memory than available, it can fail. This page explains how to identify and avoid those errors.

Use loops in Duaer

Use looping in Duaer when you want to process multiple items or repeat an action. Most nodes iterate automatically; some cases need an explicit loop.

Break work into sub-organizations in Duaer

Use Execute Sub-workflow in Duaer to split work into reusable sub-organizations. The called digital organization must start with Execute Sub-workflow Trigger.

Manage users and access in Duaer

User management in Duaer lets you invite people to work in your instance.

Map roles for Duaer LDAP

Map directory groups to Duaer instance roles or project roles.

Provision roles for Duaer OIDC

After OIDC sign-in works, map the provider’s groups to Duaer roles.

Provision roles for Duaer SAML

After SAML sign-in works, map groups in the assertion to Duaer roles.

Require two-factor auth in Duaer

How to enable 2FA for your Duaer account.

Custom roles in Duaer

Overview of custom roles in Duaer, project-level and instance-level.

Use external secret stores in Duaer

Use an external secrets vault with Duaer.

Use source control and environments in Duaer

Overview of source control and environments in Duaer.

Set up source control in Duaer

Link Duaer to your Git provider.

Work with environments in Duaer

Understand the concepts behind environments in Duaer.

Use Git in Duaer

Git concepts and limitations in Duaer.

Push and pull changes in Duaer

Send work to Git, and fetch work from Git to your Duaer instance.

Stream logs from Duaer to external systems

Stream events from Duaer to your logging tools.

Track usage with Insights in Duaer

Duaer Insights gives instance owners and admins visibility into how digital organizations perform over time.

API

Use the Duaer public API

Call the Duaer public REST API with an API key.

API

Authentication for the Duaer public API

Duaer uses API keys to authenticate public REST API calls.

API

Endpoint reference for the Duaer public API

Endpoint reference for the Duaer public REST API on your instance. This docs site does not keep a second route list that would go stale.

Duaer changelog

Entry point for Duaer version notes. Breaking changes have their own pages.

Duaer release notes

What this Duaer version adds, and what to check on upgrade.

Duaer v3 breaking changes

Behavior that changes when you upgrade to Duaer v3.

Duaer 1.0 migration checklist

What to check when moving up from before Duaer 1.0.

Duaer 2.0 breaking changes

Behavior that changes when you upgrade to Duaer 2.0.

Enable queue mode in Duaer

You can run Duaer in different modes depending on your needs. Queue mode provides the best scalability.

Control concurrency in Duaer

Limit how many production executions may run at the same time on self-hosted Duaer.

Fix memory issues on self-hosted Duaer

Memory-related errors when self-hosting Duaer: how to identify and avoid them.

Handle binary data in Duaer

How to handle large files without degrading Duaer’s performance.

Compare Duaer editions

Compare the self-hosted Duaer plans and editions: Community, Registered Community, Business, and Enterprise.

Configure user management on self-hosted Duaer

Configure your self-hosted Duaer instance to support user management, and start inviting users.

Encryption keys in Duaer

Duaer encrypts credentials before saving them to the database. It creates a key on first launch; DUAER_ENCRYPTION_KEY overrides that.

Set a custom encryption key for Duaer

Set a custom encryption key for Duaer to securely encrypt credentials.

Environment variables for Duaer

Configure the self-hosted Duaer process with environment variables.

Manage Duaer settings with environment variables

Configure self-hosted Duaer from the process environment, a .env file, or container injection.

Supported databases for Duaer

Self-hosted Duaer can use SQLite or Postgres.

Set up task runners for Duaer

How to configure Duaer task runners to execute tasks using internal or external runner processes.

Trace Duaer executions with OpenTelemetry

Send digital organization and node execution traces from Duaer to an OpenTelemetry collector.

Use the Duaer command line

Commands available in the built-in Duaer command-line interface.

Update Duaer

Best practices for updating your self-hosted Duaer.

Run security audits on Duaer

Run a security audit on your Duaer instance.

Flow logic in Duaer

Error handling, looping, and sub-organizations. Start here for the most common canvas flow questions in Duaer.

Configure self-hosted Duaer

Encryption keys, environment variables, databases, and task runners. Prefer Postgres in production and pin DUAER_ENCRYPTION_KEY.

Duaer configuration examples

Copy-ready self-hosted configuration examples. Start with a custom encryption key.

Grant execution access on a Duaer project role

In Duaer, a project role’s Executions section has View and Delete. View follows Duaer Organization View and cannot be turned on by itself.

Read personal space on a Duaer instance role

In Duaer, every instance role lists personal-space permissions, and those checkboxes cannot be cleared on the role. What you can turn off is publishing and sharing under Security & policies.

Find a restricted node in Duaer and replace it

In Duaer, a node blocked by policy still appears in search, and it cannot be added to the canvas. When you replace a step, the panel title is Replace this step.

Let Duaer read a Telegram photo

In Duaer, Telegram Trigger has to download images and files before a digital employee can read the photo, not only the text update.

Keep a Duaer node’s input and output visible on a narrow screen

In Duaer, after you open a node, the input panel and the output panel stay on screen when the window is narrow. There is no separate switch.

Keep a canceled Duaer execution canceled

In Duaer, an execution you cancel stays canceled. A later write does not turn it into success or error.

Choose how to use Duaer

Duaer runs on www.duaer.com, or you host it yourself with Docker. The plan sets monthly executions and AI credits.

Create your first digital employee in Duaer

In Duaer, create a digital employee: write instructions, pick a model, publish, then open a chat and accept the result. The UI may label the control Agent.

Build your first digital organization in Duaer

In Duaer, run a canvas flow once: manual trigger, Edit Fields, execute. This is not the digital-employee delivery path.

View the Duaer data pool

In Duaer, the data pool lists deliverables from successful production runs of digital employees. The sidebar item sits under Digital employees. Manual test runs do not write here.

Use the Duaer data market

In Duaer, the data market lists data you can fetch, what you get, and the price. The sidebar item sits directly under Data pool. Opening the catalog does not run a search.

Add a node from the Duaer Data category

In Duaer’s node creator, Duaer Data is a category for data Duaer can fetch. Open it, pick a data type (Papers through Drug labels), and Duaer adds the Duaer Data node to the canvas.

Search papers in Duaer

In Duaer, search published papers with the Duaer Data node or the public API. One successful search uses 1 credit. This page includes the full English call skill.

Key concepts in Duaer

In Duaer a digital organization is the canvas flow, and a digital employee is the side that delivers a result. Nodes, credentials, expressions, and plans are on this page.

Plans

Duaer plans and credits

Duaer hosted billing is by execution. Hobby is free, with 1,000 executions and 800 AI credits a month. Yearly billing is about 17% less.

Search proteins in Duaer

In Duaer, search genes and proteins with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search clinical trials in Duaer

In Duaer, search clinical trials with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search compounds in Duaer

In Duaer, search compounds and drugs with Duaer Data. One successful search uses 1 credit; a name that matches nothing uses 0. This page includes the full English call skill.

Search protein structures in Duaer

In Duaer, search protein structures with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search diseases in Duaer

In Duaer, search UniProt disease names with Duaer Data. One successful search uses 1 credit. Use the formal name with proteins.disease. This page includes the full English call skill.

In Duaer, search UniProt taxonomy with Duaer Data. One successful search uses 1 credit. Use the scientific name with proteins/structures organism, and taxonId with taxonomyId. This page includes the full English call skill.

Search keywords in Duaer

In Duaer, search UniProt keywords with Duaer Data. One successful search uses 1 credit. Use the formal name with proteins.keyword. This page includes the full English call skill.

Search locations in Duaer

In Duaer, search UniProt subcellular locations with Duaer Data. One successful search uses 1 credit. Use the formal name with proteins.location. This page includes the full English call skill.

Search Gene Ontology in Duaer

In Duaer, search Gene Ontology terms with Duaer Data. One successful search uses 1 credit. Use the name or goId with proteins.go. This page includes the full English call skill.

Search pathways in Duaer

In Duaer, search Reactome pathways with Duaer Data. One successful search uses 1 credit. Use pathwayId with proteins.pathway. This page includes the full English call skill.

Search genes in Duaer

In Duaer, search genes with Duaer Data. One successful search uses 1 credit. Use the symbol with proteins.gene. This page includes the full English call skill.

Search variants in Duaer

In Duaer, search variants with Duaer Data (ClinVar / dbSNP). One successful search uses 1 credit. This page includes the full English call skill.

Search domains in Duaer

In Duaer, search InterPro domains with Duaer Data. One successful search uses 1 credit. Use domainId with proteins.domain. This page includes the full English call skill.

Search preprints in Duaer

In Duaer, search bioRxiv and medRxiv preprints with Duaer Data (Europe PMC). One successful search uses 1 credit. This page includes the full English call skill.

Search grants in Duaer

In Duaer, search NIH grants and projects with Duaer Data (RePORTER). One successful search uses 1 credit. This page includes the full English call skill.

Search interactions in Duaer

In Duaer, search STRING protein interaction partners with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search expression in Duaer

In Duaer, search GTEx median tissue expression with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search targets in Duaer

In Duaer, search Open Targets gene–disease associations with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search orthologs in Duaer

In Duaer, search cross-species orthologs with Duaer Data (MyGene HomoloGene). One successful search uses 1 credit. This page includes the full English call skill.

Search activities in Duaer

In Duaer, search ChEMBL bioactivities by molecule or target with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search tissue atlas in Duaer

In Duaer, search Human Protein Atlas tissue-enriched expression with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search indications in Duaer

In Duaer, search ChEMBL drug indications by molecule with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search mechanisms in Duaer

In Duaer, search ChEMBL mechanisms of action by molecule with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search GEO in Duaer

In Duaer, search NCBI GEO series and datasets with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search assays in Duaer

In Duaer, search ChEMBL assays with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search patents in Duaer

In Duaer, search patents via Europe PMC with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Look up AlphaFold structures in Duaer

In Duaer, look up AlphaFold predicted structures by gene or UniProt accession with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search cell lines in Duaer

In Duaer, search cell lines via Cellosaurus with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search drug–gene interactions in Duaer

In Duaer, search drug–gene interactions via DGIdb with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search reactions in Duaer

In Duaer, search biochemical reactions via Rhea with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search complexes in Duaer

In Duaer, search protein complexes via Complex Portal with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search metabolites in Duaer

In Duaer, search metabolites via ChEBI with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search drug labels in Duaer

In Duaer, search FDA drug labels via OpenFDA with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search adverse events in Duaer

In Duaer, search FDA adverse event reports via OpenFDA FAERS with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search GWAS associations in Duaer

In Duaer, search GWAS Catalog top associations via REST API v2 with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search RxNorm in Duaer

In Duaer, look up RxNorm drug names via NLM RxNav with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search MeSH in Duaer

In Duaer, look up MeSH subject headings via NLM MeSH with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search phenotypes in Duaer

In Duaer, look up HPO phenotype terms via EBI OLS with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search crossrefs in Duaer

In Duaer, look up UniChem compound cross-references by InChIKey with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search drug recalls in Duaer

In Duaer, search FDA drug recall enforcement reports via OpenFDA with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search ligands in Duaer

In Duaer, look up PDBe chemical component (CCD) ligands with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search ChEMBL in Duaer

In Duaer, search bioactive molecules via ChEMBL with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search Ensembl in Duaer

In Duaer, look up Ensembl genes by symbol or id (coords, biotype) with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search KEGG in Duaer

In Duaer, search KEGG pathways, diseases, or compounds with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search Monarch in Duaer

In Duaer, search Monarch diseases, phenotypes, or genes with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search HGNC in Duaer

In Duaer, look up approved gene symbols via HGNC with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search PRIDE in Duaer

In Duaer, search PRIDE proteomics projects with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search Uberon in Duaer

In Duaer, search Uberon anatomy terms with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search BioStudies in Duaer

In Duaer, search BioStudies multi-omics studies with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search Orphanet in Duaer

In Duaer, search Orphanet rare diseases with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

Search EFO in Duaer

In Duaer, search traits and experimental factors via EFO. One successful search uses 1 credit.

Search RNAcentral in Duaer

In Duaer, search non-coding RNA in RNAcentral. One successful search uses 1 credit.

Search Mondo in Duaer

In Duaer, search disease terms via Mondo. One successful search uses 1 credit.

Search Cell Ontology in Duaer

In Duaer, search cell types via Cell Ontology. One successful search uses 1 credit.

Search MP in Duaer

In Duaer, search mammalian phenotypes via MP. One successful search uses 1 credit.

Search MyDisease in Duaer

In Duaer, search disease annotations in MyDisease. One successful search uses 1 credit.

Search metabolomics studies in Duaer

In Duaer, search metabolomics studies in Metabolomics Workbench. One successful search uses 1 credit.

Search IntAct in Duaer

In Duaer, search molecular interactions in IntAct. One successful search uses 1 credit.

Search BioSamples in Duaer

In Duaer, search biological samples in BioSamples. One successful search uses 1 credit.

Search ENCODE in Duaer

In Duaer, search functional genomics experiments in ENCODE. One successful search uses 1 credit.

Search Pathway Commons in Duaer

In Duaer, search pathways in Pathway Commons. One successful search uses 1 credit.

Search Alliance genes in Duaer

In Duaer, search genes in the Alliance of Genome Resources. One successful search uses 1 credit.

Search ClinVar in Duaer

In Duaer, search clinical variants in ClinVar. One successful search uses 1 credit.

Search dbSNP in Duaer

In Duaer, search variant ids in dbSNP. One successful search uses 1 credit.

Search JASPAR in Duaer

In Duaer, search TF binding motifs in JASPAR. One successful search uses 1 credit.

Search cBioPortal in Duaer

In Duaer, search cancer genomics studies in cBioPortal. One successful search uses 1 credit.

Search GDC in Duaer

In Duaer, search NCI GDC cancer projects. One successful search uses 1 credit.

Search Expression Atlas in Duaer

In Duaer, search bulk expression experiments in Expression Atlas. One successful search uses 1 credit.

Search Single Cell Atlas in Duaer

In Duaer, search single-cell experiments in Single Cell Expression Atlas. One successful search uses 1 credit.

Search NDC in Duaer

In Duaer, search drug NDC records in OpenFDA. One successful search uses 1 credit.

Search device events in Duaer

In Duaer, search device adverse events in OpenFDA. One successful search uses 1 credit.

Search Sequence Ontology in Duaer

In Duaer, search sequence feature terms via Sequence Ontology. One successful search uses 1 credit.

Search DOID in Duaer

In Duaer, search disease terms via DOID. One successful search uses 1 credit.

Search NCBI Taxonomy in Duaer

In Duaer, search taxa via NCBI Taxonomy ontology. One successful search uses 1 credit.

Search GlyGen in Duaer

In Duaer, look up glycans in GlyGen by GlyTouCan id. One successful search uses 1 credit.

Search ChEBI in Duaer

In Duaer, search chemical entities via ChEBI. One successful search uses 1 credit.

Search NCIt in Duaer

In Duaer, search clinical terms via NCI Thesaurus. One successful search uses 1 credit.

Search Pfam in Duaer

In Duaer, search Pfam protein families. One successful search uses 1 credit.

Search EMDB in Duaer

In Duaer, search cryo-EM structures in EMDB. One successful search uses 1 credit.

Search UniParc in Duaer

In Duaer, search the UniParc sequence archive. One successful search uses 1 credit.

Search Europe PMC in Duaer

In Duaer, search life-science literature in Europe PMC. One successful search uses 1 credit.

Search ORCID in Duaer

In Duaer, search researchers in ORCID. One successful search uses 1 credit.

Search Protein Ontology in Duaer

In Duaer, search protein entities via Protein Ontology. One successful search uses 1 credit.

Search OBI in Duaer

In Duaer, search assay terms via OBI. One successful search uses 1 credit.

Search MPATH in Duaer

In Duaer, search pathology terms via MPATH. One successful search uses 1 credit.

Search Crossref in Duaer

In Duaer, search scholarly works in Crossref. One successful search uses 1 credit.

Search MyChem in Duaer

In Duaer, search aggregated compound annotations in MyChem. One successful search uses 1 credit.

Search Drugs@FDA in Duaer

In Duaer, search FDA-approved drug applications. One successful search uses 1 credit.

Search UniRef in Duaer

In Duaer, search UniRef protein sequence clusters. One successful search uses 1 credit.

Search UniRule in Duaer

In Duaer, search UniRule annotation rules. One successful search uses 1 credit.

Search Proteomes in Duaer

In Duaer, search UniProt proteomes. One successful search uses 1 credit.

Search ENA in Duaer

In Duaer, search nucleotide sequences in ENA. One successful search uses 1 credit.

Search EMPIAR in Duaer

In Duaer, search cryo-EM public image archive entries in EMPIAR. One successful search uses 1 credit.

Search BMRB in Duaer

In Duaer, search NMR entries in BMRB. One successful search uses 1 credit.

Search Swiss-Model in Duaer

In Duaer, look up Swiss-Model structures by UniProt accession. One successful search uses 1 credit.

Search Lipid Maps in Duaer

In Duaer, search lipid structures in LIPID MAPS. One successful search uses 1 credit.

Search MGnify in Duaer

In Duaer, search microbiome studies in MGnify. One successful search uses 1 credit.

Search BV-BRC in Duaer

In Duaer, search pathogen genomes in BV-BRC. One successful search uses 1 credit.

Search ClinPGx in Duaer

In Duaer, search pharmacogenomics genes in ClinPGx. One successful search uses 1 credit.

Search DailyMed in Duaer

In Duaer, search drug labeling in DailyMed. One successful search uses 1 credit.

Search RxClass in Duaer

In Duaer, search drug classes in RxClass. One successful search uses 1 credit.

Search OpenFDA 510(k) in Duaer

In Duaer, search FDA 510(k) device clearances. One successful search uses 1 credit.

Search OpenFDA Food in Duaer

In Duaer, search FDA food enforcement reports. One successful search uses 1 credit.

Search Figshare in Duaer

In Duaer, search research outputs in Figshare. One successful search uses 1 credit.

Search Dryad in Duaer

In Duaer, search research datasets in Dryad. One successful search uses 1 credit.

Search ProteomeXchange in Duaer

In Duaer, look up ProteomeXchange datasets. One successful search uses 1 credit.

Search Omnipath in Duaer

In Duaer, search molecular interactions in OmniPath. One successful search uses 1 credit.

Search OMA in Duaer

In Duaer, look up proteins in OMA browser. One successful search uses 1 credit.

Search OrthoDB in Duaer

In Duaer, search orthologs in OrthoDB. One successful search uses 1 credit.

Search PANTHER in Duaer

In Duaer, look up gene info in PANTHER. One successful search uses 1 credit.

Search PATO in Duaer

In Duaer, search phenotype quality terms via PATO. One successful search uses 1 credit.

Search EDAM in Duaer

In Duaer, search bioinformatics concepts via EDAM. One successful search uses 1 credit.

Search BAO in Duaer

In Duaer, search BioAssay Ontology terms via BAO. One successful search uses 1 credit.

Search BTO in Duaer

In Duaer, search tissue terms via BRENDA Tissue Ontology. One successful search uses 1 credit.

Search PW in Duaer

In Duaer, search pathway ontology terms via PW. One successful search uses 1 credit.

Search VO in Duaer

In Duaer, search vaccine ontology terms via VO. One successful search uses 1 credit.

Search OncoTree in Duaer

In Duaer, search tumor types in OncoTree. One successful search uses 1 credit.

Search IDR in Duaer

In Duaer, browse imaging projects in IDR. One successful search uses 1 credit.

Search HCA in Duaer

In Duaer, search Human Cell Atlas projects. One successful search uses 1 credit.

Search UCSC in Duaer

In Duaer, search UCSC genome assemblies. One successful search uses 1 credit.

Search Harmonizome in Duaer

In Duaer, look up gene annotations in Harmonizome. One successful search uses 1 credit.

Search PubTator in Duaer

In Duaer, autocomplete biomedical entities in PubTator. One successful search uses 1 credit.

Search iCite in Duaer

In Duaer, look up NIH relative citation ratios in iCite. One successful search uses 1 credit.

Search ROR in Duaer

In Duaer, search research organizations in ROR. One successful search uses 1 credit.

Search OpenAlex Authors in Duaer

In Duaer, search authors in OpenAlex. One successful search uses 1 credit.

Search OpenAlex Institutions in Duaer

In Duaer, search institutions in OpenAlex. One successful search uses 1 credit.

Search OpenAlex Topics in Duaer

In Duaer, search topics in OpenAlex. One successful search uses 1 credit.

Search Crossref Funders in Duaer

In Duaer, search funders in Crossref. One successful search uses 1 credit.

Search NSF Awards in Duaer

In Duaer, search NSF awards. One successful search uses 1 credit.

Search EVA in Duaer

In Duaer, browse variation studies in EVA. One successful search uses 1 credit.

Search Ensembl VEP in Duaer

In Duaer, predict variant effects with Ensembl VEP. One successful search uses 1 credit.

Search NCBI Datasets in Duaer

In Duaer, look up genes in NCBI Datasets. One successful search uses 1 credit.

Search 4DN in Duaer

In Duaer, search 4D Nucleome publications. One successful search uses 1 credit.

Search RGD in Duaer

In Duaer, look up rat genes in RGD. One successful search uses 1 credit.

Search SGD in Duaer

In Duaer, look up yeast genes in SGD. One successful search uses 1 credit.

Search Nextstrain in Duaer

In Duaer, search pathogen datasets in Nextstrain. One successful search uses 1 credit.

Search MedlinePlus in Duaer

In Duaer, look up consumer health topics in MedlinePlus. One successful search uses 1 credit.

Search ICD-10 in Duaer

In Duaer, search ICD-10-CM codes via ClinicalTables. One successful search uses 1 credit.

Search Bioregistry in Duaer

In Duaer, search prefix registry entries in Bioregistry. One successful search uses 1 credit.

Search bio.tools in Duaer

In Duaer, search bioinformatics tools in bio.tools. One successful search uses 1 credit.

Search Dockstore in Duaer

In Duaer, search workflows in Dockstore. One successful search uses 1 credit.

Search WorkflowHub in Duaer

In Duaer, search workflows in WorkflowHub. One successful search uses 1 credit.

Search DOAJ in Duaer

In Duaer, search open-access articles in DOAJ. One successful search uses 1 credit.

Search Wikidata in Duaer

In Duaer, search entities in Wikidata. One successful search uses 1 credit.

Search NodeNorm in Duaer

In Duaer, normalize biomedical curies via SRI NodeNorm. One successful search uses 1 credit.

Search NameResolver in Duaer

In Duaer, resolve biomedical names via SRI Name Resolver. One successful search uses 1 credit.

Search GBIF in Duaer

In Duaer, search species in GBIF. One successful search uses 1 credit.

Search ITIS in Duaer

In Duaer, search taxonomy in ITIS. One successful search uses 1 credit.

Search WoRMS in Duaer

In Duaer, search marine species in WoRMS. One successful search uses 1 credit.

Search iNaturalist in Duaer

In Duaer, search taxa in iNaturalist. One successful search uses 1 credit.

Search DisProt in Duaer

In Duaer, search intrinsically disordered proteins in DisProt. One successful search uses 1 credit.

Search LOTUS in Duaer

In Duaer, search natural products in LOTUS. One successful search uses 1 credit.

Search LINCS in Duaer

In Duaer, search LINCS portal datasets. One successful search uses 1 credit.

Search CELLxGENE in Duaer

In Duaer, search CELLxGENE collections. One successful search uses 1 credit.

Search MG-RAST in Duaer

In Duaer, search MG-RAST metagenome projects. One successful search uses 1 credit.

Search Galaxy in Duaer

In Duaer, search Galaxy tools and version. One successful search uses 1 credit.

Search nf-core in Duaer

In Duaer, search nf-core pipelines. One successful search uses 1 credit.

Search re3data in Duaer

In Duaer, search research data repositories in re3data. One successful search uses 1 credit.

Search arXiv in Duaer

In Duaer, search preprints on arXiv. One successful search uses 1 credit.

Search HAL in Duaer

In Duaer, search open archive documents in HAL. One successful search uses 1 credit.

Search Hugging Face in Duaer

In Duaer, search models on Hugging Face. One successful search uses 1 credit.

Search OpenAIRE in Duaer

In Duaer, search publications in OpenAIRE. One successful search uses 1 credit.

Search Harvard Dataverse in Duaer

In Duaer, search datasets in Harvard Dataverse. One successful search uses 1 credit.

Search DOAJ Journals in Duaer

In Duaer, search open access journals in DOAJ. One successful search uses 1 credit.

Search OpenAlex Sources in Duaer

In Duaer, search sources in OpenAlex. One successful search uses 1 credit.

Search OpenAlex Funders in Duaer

In Duaer, search funders in OpenAlex. One successful search uses 1 credit.

Search OpenAlex Publishers in Duaer

In Duaer, search publishers in OpenAlex. One successful search uses 1 credit.

Search OpenAlex Concepts in Duaer

In Duaer, search concepts in OpenAlex. One successful search uses 1 credit.

Search OpenFDA Device UDI in Duaer

In Duaer, search FDA device UDI records. One successful search uses 1 credit.

Search OpenFDA Device PMA in Duaer

In Duaer, search FDA device PMA approvals. One successful search uses 1 credit.

Search OpenFDA Device Recall in Duaer

In Duaer, search FDA device recalls. One successful search uses 1 credit.

Search OpenFDA Device Class in Duaer

In Duaer, search FDA device classifications. One successful search uses 1 credit.

Search OpenFDA Animal Events in Duaer

In Duaer, search FDA animal drug adverse events. One successful search uses 1 credit.

Search OpenFDA Food Events in Duaer

In Duaer, search FDA food adverse events. One successful search uses 1 credit.

Search OpenFDA Tobacco in Duaer

In Duaer, search FDA tobacco problem reports. One successful search uses 1 credit.

Search RxTerms in Duaer

In Duaer, search drug terms in RxTerms. One successful search uses 1 credit.

Search NCBI Assembly in Duaer

In Duaer, search genome assemblies in NCBI. One successful search uses 1 credit.

Search NCBI BioProject in Duaer

In Duaer, search BioProjects in NCBI. One successful search uses 1 credit.

Search NCBI SRA in Duaer

In Duaer, search sequencing runs in NCBI SRA. One successful search uses 1 credit.

Search NCBI GTR in Duaer

In Duaer, search genetic tests in NCBI GTR. One successful search uses 1 credit.

Search NCBI MedGen in Duaer

In Duaer, search MedGen concepts in NCBI. One successful search uses 1 credit.

Search NCBI Variation in Duaer

In Duaer, look up RefSNP records in NCBI Variation. One successful search uses 1 credit.

Search dbVar in Duaer

In Duaer, search structural variants in dbVar. One successful search uses 1 credit.

Search HomoloGene in Duaer

In Duaer, search gene homologs in HomoloGene. One successful search uses 1 credit.

Search GTEx eQTL in Duaer

In Duaer, search single-tissue eQTLs in GTEx. One successful search uses 1 credit.

Search SCOP in Duaer

In Duaer, search SCOP domain mappings via PDBe. One successful search uses 1 credit.

Search PomBase in Duaer

In Duaer, look up fission yeast genes in PomBase. One successful search uses 1 credit.

Search MGI in Duaer

In Duaer, search mouse genes in MGI. One successful search uses 1 credit.

Search CLO in Duaer

In Duaer, search cell line ontology terms via CLO. One successful search uses 1 credit.

Search ECTO in Duaer

In Duaer, search environmental exposure terms via ECTO. One successful search uses 1 credit.

Search RO in Duaer

In Duaer, search relation ontology terms via RO. One successful search uses 1 credit.

Search FBbt in Duaer

In Duaer, search Drosophila anatomy via FBbt. One successful search uses 1 credit.

Search ZFA in Duaer

In Duaer, search zebrafish anatomy via ZFA. One successful search uses 1 credit.

Search WBbt in Duaer

In Duaer, search C. elegans anatomy via WBbt. One successful search uses 1 credit.

Search XAO in Duaer

In Duaer, search Xenopus anatomy via XAO. One successful search uses 1 credit.

Search ENVO in Duaer

In Duaer, search environment terms via ENVO. One successful search uses 1 credit.

Search FOODON in Duaer

In Duaer, search food ontology terms via FOODON. One successful search uses 1 credit.

Search OAE in Duaer

In Duaer, search adverse event terms via OAE. One successful search uses 1 credit.

Search IDO in Duaer

In Duaer, search infectious disease terms via IDO. One successful search uses 1 credit.

Search CIDO in Duaer

In Duaer, search coronavirus terms via CIDO. One successful search uses 1 credit.

Search AGRO in Duaer

In Duaer, search agronomy terms via AGRO. One successful search uses 1 credit.

Search PO in Duaer

In Duaer, search plant ontology terms via PO. One successful search uses 1 credit.

Search TO in Duaer

In Duaer, search plant trait terms via TO. One successful search uses 1 credit.

Search CHMO in Duaer

In Duaer, search chemical methods via CHMO. One successful search uses 1 credit.

Search MS in Duaer

In Duaer, search mass spectrometry terms via MS. One successful search uses 1 credit.

Search STATO in Duaer

In Duaer, search statistics terms via STATO. One successful search uses 1 credit.

Search DUO in Duaer

In Duaer, search data use ontology terms via DUO. One successful search uses 1 credit.

Search IAO in Duaer

In Duaer, search information artifact terms via IAO. One successful search uses 1 credit.

Search SIO in Duaer

In Duaer, search semantics science terms via SIO. One successful search uses 1 credit.

Search CHEMINF in Duaer

In Duaer, search chemical information terms via CHEMINF. One successful search uses 1 credit.

Save and publish a digital organization in Duaer

In Duaer, edits stay a draft until you publish. Schedules, webhooks, and production runs use the published version.

Read executions in Duaer

In Duaer, one execution is one run of a digital organization. The Executions list shows success, error, canceled, running, queued, and waiting.

Debug a past execution in Duaer

In Duaer, open a past execution and use Debug in editor to pin that run’s data on the canvas, then change a node and run again.

Split a Duaer run with If and Switch

In Duaer, If sends each item to the true or false output. Switch sends items to several outputs by rules or an expression.

Merge branches in Duaer

In Duaer, Merge waits until each input has data, then appends, combines by field, runs SQL, or keeps one branch.

Pause a Duaer execution with Wait

In Duaer, Wait pauses the execution until a time interval, a date, a webhook call, or a form submit.

Export and import a digital organization in Duaer

In Duaer, Export JSON saves the canvas and nodes. It does not include credential secrets. After import, select credentials again.

Share and tag digital organizations in Duaer

In Duaer, Share hands a digital organization to other people or a project. Tags live with the description and filter the list.

Receive a request with Webhook in Duaer

In Duaer, Webhook starts a digital organization. The Test URL works only while you are listening. The Production URL accepts outside calls after you publish.

Run a Duaer digital organization on a schedule

In Duaer, Schedule Trigger starts a digital organization on the interval you set. It keeps that clock only after you publish. Execute on the canvas runs once now and does not wait for the clock.

Call an API with HTTP Request in Duaer

In Duaer, HTTP Request sends the method and URL you enter. Put the account in a credential, not in the node parameters.

Drop items with Filter in Duaer

In Duaer, Filter splits by condition: matches go to Kept, the rest to Discarded. For node steps, see /build/filter/.

Choose branch order in Duaer

In Duaer, when a digital organization splits into branches, Execution Logic decides which branch finishes first. New digital organizations use v1 (recommended).

Start from a template in Duaer

In Duaer, a template is a ready-made digital organization. Using it copies the canvas onto your instance. You select credentials here.

Data

Keep rows in a Duaer data table

In Duaer, a data table lives in the current project. Rows one digital organization writes can be read by another in the same project.

Reply to a caller with Respond to Webhook in Duaer

In Duaer, Respond to Webhook chooses when and what a Webhook or form sends back. The Webhook in front must set Respond to Using Respond to Webhook Node.

Collect a form submission in Duaer

In Duaer, Duaer Form Trigger builds a web form. A submission starts the digital organization, and the fields show up on the node output.

Change fields with Edit Fields in Duaer

In Duaer, Edit Fields (Set) adds or replaces fields on each item. Use it when you only change a few fields, instead of writing Code.

Process items in batches with Loop Over Items in Duaer

In Duaer, the panel label is Loop Over Items (Split in Batches). Most nodes already run once per item. Use this node for a fixed batch size and a return path between batches. For node steps, see /build/loop-over-items/.

Start a Duaer run with Manual Trigger

In Duaer, Manual Trigger starts only when you select Execute Duaer Organization. A digital organization may have only one Manual Trigger.

Write a short step with Code in Duaer

In Duaer, Code runs JavaScript or Python on the current items. Prefer Edit Fields when you only change a few fields.

Force a failure with Stop and Error in Duaer

In Duaer, Stop and Error stops the execution and records an error. Later nodes do not run. Use it when an error digital organization should start.

Cap how many items continue with Limit in Duaer

In Duaer, Limit keeps only the first or last items. Items beyond Max Items are dropped at that step.

Sort items in Duaer

In Duaer, Sort reorders the current items by field. Type can be Simple, Random, or Code.

Remove duplicate items in Duaer

In Duaer, Remove Duplicates drops items that repeat in the current input. It can also drop values already seen in earlier executions.

Aggregate items into one list in Duaer

In Duaer, Aggregate turns many input items into fewer outputs. You can collect selected fields, or pack the whole batch into one list.

Convert Markdown and HTML in Duaer

In Duaer, the Markdown node converts between Markdown and HTML. The result is written to the field named in Destination Key.

Write a file with Convert to File in Duaer

In Duaer, Convert to File turns the current JSON items into a file on binary. The default Operation is Convert to CSV.

Read a file with Extract from File in Duaer

In Duaer, Extract from File reads JSON items or text from a file on binary. The default Operation is Extract From CSV.

Work with dates in the Date & Time node in Duaer

In Duaer, Date & Time defaults to Get Current Date. When you only need the current time in an expression, {{ $now }} is enough without this node.

Rename fields with Rename Keys in Duaer

In Duaer, Rename Keys changes field names, not values. Under Keys, set Current Key Name and New Key Name.

Split a list into items with Split Out in Duaer

In Duaer, Split Out turns a list inside an item into separate items. Fields To Split Out is required. Include defaults to No Other Fields.

Compare two inputs with Compare Datasets in Duaer

In Duaer, Compare Datasets has Input A and Input B, and four outputs: In A only, Same, Different, and In B only. Pair rows with Fields to Match.

Compress or decompress files with Compression in Duaer

In Duaer, Compression defaults to Operation Decompress. Input Binary Field(s) defaults to data. It works on binary on the item, not a host path.

Hash a value with Crypto in Duaer

In Duaer, Crypto defaults to Action Hash. Type defaults to SHA256. The result goes to Property Name (default data). Encoding defaults to HEX.

Filter items in Duaer

In Duaer, Filter has two outputs: Kept and Discarded. Set Conditions for the rule. Ignore Case under Options is on by default.

Branch with If in Duaer

In Duaer, If has two outputs: true and false. Conditions hold the rule. Items on an unwired side are dropped.

Route items with Switch in Duaer

In Duaer, Switch defaults to Mode Rules. Under Routing Rules, set Conditions per rule. With Fallback Output None, unmatched items are ignored.

Pause with the Wait node in Duaer

In Duaer, Wait defaults to Resume After Time Interval. On the current version, Wait Amount defaults to 5 and Wait Unit defaults to Seconds.

Configure the Merge node in Duaer

In Duaer, Merge defaults to Mode Append, which lines up items from each input one after another. To join by fields, set Mode to Combine.

Summarize fields in Duaer

In Duaer, Summarize sets Aggregation (default Count) and Field under Fields to Summarize. Use Fields to Split By to group.

Work with HTML in Duaer

In Duaer, HTML defaults to Operation Generate HTML Template. You can also Extract HTML Content or Convert to HTML Table.

Convert XML in Duaer

In Duaer, XML defaults to Mode XML to JSON. Property Name defaults to data. If the XML is on binary, convert it to text with Extract from File first.

Edit images with Edit Image in Duaer

In Duaer, Edit Image defaults to Operation Border. Property Name defaults to data and points at the image on the item’s binary field.

Tag executions with Execution Data in Duaer

In Duaer, Execution Data defaults to Operation Save Highlight Data (for Search/review). Under Data to Save, add Key and Value pairs for the executions list and filters.

Pass items through with No Operation in Duaer

In Duaer, the node is named No Operation, do nothing. It has no parameters. Items pass through unchanged. Use it as a placeholder or to tidy wiring.

Configure Stop and Error in Duaer

In Duaer, Stop and Error has no outputs. Error Type defaults to Error Message. When the run reaches it, the execution fails and later nodes do not run.

Call a sub-organization with Execute Duaer Organization

In Duaer, the node is named Execute Duaer Organization. On current versions Source defaults to Database. Mode defaults to Run once with all items. The called organization must start with Execute Workflow Trigger.

Run a host command with Execute Command in Duaer

In Duaer, Execute Command runs a shell command on the machine that hosts Duaer. Execute Once is on by default. Command is required.

Sign a token with JWT in Duaer

In Duaer, JWT defaults to Operation Sign. You need a jwtAuth credential. Use JSON to Build Payload is off by default.

Add a Sticky Note on the Duaer canvas

In Duaer, Sticky Note has no inputs or outputs. Content defaults to a short Markdown tip. Height is 160, Width 240, Color 1.

Call an API with GraphQL in Duaer

In Duaer, GraphQL defaults to Authentication None and HTTP Request Method POST. Set Endpoint and Query. The response defaults to JSON on Response Data Property Name (default data).

Connect over SSH in Duaer

In Duaer, SSH defaults to Authentication Password, Resource Command, and Operation Execute. Working Directory defaults to /.

Transfer files with FTP in Duaer

In Duaer, the FTP node Protocol defaults to FTP (SFTP is available). Operation defaults to Download. The file lands on Put Output File in Field (default data).

Configure Loop Over Items in Duaer

In Duaer, the panel label is Loop Over Items (Split in Batches). The default name is Loop Over Items. Outputs are loop and done. Batch Size defaults to 1.

Send mail with Send Email in Duaer

In Duaer, the node is named Send Email. Operation defaults to Send. Set From Email, To Email, and Subject. On the current version Email Format defaults to HTML.

Read and write host files in Duaer

In Duaer, Read/Write Files from Disk defaults to Operation Read File(s) From Disk. It uses paths on the machine that runs Duaer, not the computer in your browser.

Add form pages with Duaer Form

In Duaer, Duaer Form comes after Duaer Form Trigger. Page Type defaults to Next Form Page. Form Ending closes the form.

Publish with MQTT in Duaer

In Duaer, MQTT publishes to a topic. Topic is required. Send Input Data is on by default. You need an mqtt credential.

Use DebugHelper in Duaer

In Duaer, DebugHelper intentionally causes problems or generates sample data for debugging. Category defaults to Throw Error. Error Type defaults to NodeApiError.

Read and write Redis in Duaer

In Duaer, Redis defaults to Operation Info. Use Set, Get, and other operations for keys. You need a redis credential.

Publish with AMQP Sender in Duaer

In Duaer, AMQP Sender publishes over AMQP 1.0 to a Queue / Topic once per item. You need an amqp credential.

Start on new mail with Email Trigger (IMAP)

In Duaer, Email Trigger (IMAP) starts the digital organization when new mail arrives. Mailbox Name defaults to INBOX. Action defaults to Mark as Read. Format defaults to Simple. You need an imap credential.

Read and write Postgres in Duaer

In Duaer, Postgres defaults to Operation Insert. Choose Schema and Table, then map fields in Columns. You need a postgres credential.

Read and write MySQL in Duaer

In Duaer, MySQL defaults to Operation Insert. Choose Table. Data Mode defaults to Auto-Map Input Data to Columns. You need a mySql credential.

Find documents with MongoDB in Duaer

In Duaer, MongoDB defaults to Resource Document and Operation Find. Set Collection. Query (JSON Format) defaults to {}. You need a mongoDb credential.

Watch host files with Local File Trigger

In Duaer, Local File Trigger starts the digital organization on host filesystem changes. Paths are on the machine that runs Duaer, not the computer in your browser.

Send a Slack message in Duaer

In Duaer, Slack defaults to Authentication Access Token, Resource Message, and Operation Send. Message Type defaults to Simple Text Message.

Send a Telegram message in Duaer

In Duaer, Telegram defaults to Resource Message and Operation Send Message. Set Chat ID and Text. You need a telegramApi credential.

Read rows with Google Sheets in Duaer

In Duaer, Google Sheets defaults to Authentication OAuth2, Resource Sheet, and Operation Get Row(s). You need a googleSheetsOAuth2Api credential.

Generate a TOTP code in Duaer

In Duaer, TOTP defaults to Operation Generate Secret. Under Options, Algorithm defaults to SHA1, Digits to 6, and Period to 30. You need a totpApi credential (label and secret).

Upload a file with Google Drive in Duaer

In Duaer, Google Drive defaults to Authentication OAuth2, Resource File, and Operation Upload. Input Data Field Name defaults to data. You need a googleDriveOAuth2Api credential.

Send a Discord message in Duaer

In Duaer, Discord defaults to Connection Type Bot Token and Resource Channel. To chat, set Resource to Message and Operation to Send. You need a discordBotApi credential.

Upload a file with Dropbox in Duaer

In Duaer, Dropbox defaults to Authentication Access Token, Resource File, and Operation Upload. File Path is required. You need a dropboxApi credential.

Start on Server-Sent Events with SSE Trigger

In Duaer, SSE Trigger starts the digital organization when Server-Sent Events arrive. URL is required. Event data must be JSON.

Send mail with Gmail in Duaer

In Duaer, Gmail defaults to Authentication OAuth2, Resource Message, and Operation Send. Email Type defaults to HTML. You need a gmailOAuth2 credential.

Create a Notion page in Duaer

In Duaer, Notion defaults to Authentication API Key, Resource Page, and Operation Create. Content Type defaults to Block Builder. You need a notionApi credential.

Create a GitHub issue in Duaer

In Duaer, GitHub defaults to Authentication Access Token, Resource Issue, and Operation Create. You need a githubApi credential.

Create an Airtable record in Duaer

In Duaer, Airtable defaults to Authentication Token and Resource Record; Operation defaults to Get. For create, switch to Create, pick Base and Table, then map Columns. You need an airtableTokenApi credential.

Create or update a HubSpot contact in Duaer

In Duaer, HubSpot defaults to Authentication API Key, Resource Contact, and Operation Create or Update. Email is required. You need a hubspotApi credential.

Create a Stripe customer in Duaer

In Duaer, Stripe defaults to Resource Balance. To create a customer, set Resource to Customer, Operation to Create, and set Name. You need a stripeApi credential.

Send an SMS with Twilio in Duaer

In Duaer, Twilio defaults to Resource SMS and Operation Send. Set From, To, and Message. You need a twilioApi credential.

Create a Trello card in Duaer

In Duaer, Trello defaults to Authentication API Key, Resource Card, and Operation Create. List ID and Name are required. You need a trelloApi credential.

Create an Asana task in Duaer

In Duaer, Asana defaults to Authentication Access Token, Resource Task, and Operation Create. Workspace Name or ID and Name are required. You need an asanaApi credential.

Create a Linear issue in Duaer

In Duaer, Linear defaults to Authentication API Token, Resource Issue, and Operation Create. Team Name or ID and Title are required. You need a linearApi credential.

Create a Jira issue in Duaer

In Duaer, Jira defaults to Jira Version Cloud, Resource Issue, and Operation Create. Project, Issue Type, and Summary are required. You need a jiraSoftwareCloudApi credential.

Create a Zendesk ticket in Duaer

In Duaer, Zendesk defaults to Authentication API Token, Resource Ticket, and Operation Create. Description is required. You need a zendeskApi credential.

Send a WhatsApp template in Duaer

In Duaer, WhatsApp Business Cloud defaults to Resource Message and Operation Send Template. Sender Phone Number (or ID), Recipient's Phone Number, and Template are required. You need a whatsAppApi credential.

Create a Google Calendar event in Duaer

In Duaer, Google Calendar defaults to Resource Event and Operation Create. Calendar, Start, and End are required; Start and End default to now and one hour later. You need a googleCalendarOAuth2Api credential.

Send mail with Outlook in Duaer

In Duaer, Microsoft Outlook defaults to Authentication Outlook OAuth2, Resource Message, and Operation Send. To is required. You need a microsoftOutlookOAuth2Api credential.