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Search interactions in Duaer

In Duaer, search STRING protein interaction partners with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

What you get

Interactions in the Duaer data market searches STRING protein partners. One successful search uses 1 credit.

Add the node from the Duaer Data category (Interactions), or copy the skill on the data market. Related: Genes, Proteins, and Organisms for Taxonomy ID.

Search on the canvas

  1. Open the node creator, select Duaer Data, then Interactions.
  2. Protein is required (a new node starts with INS). Species defaults to 9606; Required score is optional (0–1000).
  3. Limit defaults to 10, max 20. Select Execute step.

A successful search uses 1 credit. Production deliverables land in the data pool.

Call the API

  • GET https://api.duaer.com/v1/data/interactions?...
  • Authorization: Bearer <Duaer key>
  • protein is required.

For keys, refer to Authentication for the Duaer public API. Below is the same English call skill as Copy skill.

Call skill

Same text as Copy skill on the Duaer data market. Keep it English.

---
name: duaer-interactions
description: >-
  Search STRING protein interaction partners through Duaer.
  One successful search uses 1 Duaer credit.
---

# Duaer interactions

Search STRING protein interaction partners through Duaer with a Duaer key.

## Call

`GET https://api.duaer.com/v1/data/interactions?protein=INS&species=9606&limit=10`

Header: `Authorization: Bearer <Duaer key>`

Use an account key or a model API key.

`protein` is required. Other fields are optional.

- `protein` — gene symbol, UniProt accession, or STRING id. Look up symbols with https://skills.duaer.com/genes.md or proteins with https://skills.duaer.com/proteins.md.
- `species` — optional. NCBI taxonomy id. Default `9606` (human). Look up ids with https://skills.duaer.com/organisms.md.
- `requiredScore` — optional. STRING threshold from 0 to 1000. Omit for the STRING default.
- `limit` — optional. From 1 to 20. Default 10.

## Result

Each item has `source`, `title`, `url`, `summary`, `proteinA`, `proteinB`, `stringIdA`, `stringIdB`, `partner`, `partnerStringId`, `score`, `neighborhood`, `fusion`, `cooccurrence`, `coexpression`, `experimental`, `database`, `textmining`, and `taxId`.
Reuse `partner` as `gene` when searching proteins, or as `protein` for further interaction partners.

## Credits

One successful search uses 1 credit.
An empty search, a failed search, a compound that matches nothing, or no remaining credits uses 0.
No remaining credits returns 402 and does not search.
A missing key returns 401.

Questions

What is the partner field?

The interaction partner gene symbol relative to your query protein. Reuse it for proteins or further interactions.

In this section

Get started

Search proteins in Duaer

In Duaer, search genes and proteins with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

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Search genes in Duaer

In Duaer, search genes with Duaer Data. One successful search uses 1 credit. Use the symbol with proteins.gene. This page includes the full English call skill.

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Search organisms in Duaer

In Duaer, search UniProt taxonomy with Duaer Data. One successful search uses 1 credit. Use the scientific name with proteins/structures organism, and taxonId with taxonomyId. This page includes the full English call skill.

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Search expression in Duaer

In Duaer, search GTEx median tissue expression with Duaer Data. One successful search uses 1 credit. This page includes the full English call skill.

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Use the Duaer data market

In Duaer, the data market lists data you can fetch, what you get, and the price. The sidebar item sits directly under Data pool. Opening the catalog does not run a search.